Large current difference in Au-coated vertical silicon nanowire electrode array with functionalization of peptides
© Kim et al.; licensee Springer. 2013
Received: 10 July 2013
Accepted: 14 November 2013
Published: 26 November 2013
Au-coated vertical silicon nanowire electrode array (VSNEA) was fabricated using a combination of bottom-up and top-down approaches by chemical vapor deposition and complementary metal-oxide-semiconductor process for biomolecule sensing. To verify the feasibility for the detection of biomolecules, Au-coated VSNEA was functionalized using peptides having a fluorescent probe. Cyclic voltammograms of the peptide-functionalized Au-coated VSNEA show a steady-state electrochemical current behavior. Because of the critically small dimension and vertically aligned nature of VSNEA, the current density of Au-coated VSNEA was dramatically higher than that of Au film electrodes. Au-coated VSNEA further showed a large current difference with and without peptides that was nine times more than that of Au film electrodes. These results indicate that Au-coated VSENA is highly effective device to detect peptides compared to conventional thin-film electrodes. Au-coated VSNEA can also be used as a divergent biosensor platform in many applications.
KeywordsNanoelectrode Silicon nanowire Biomolecule sensing Cyclic voltammograms High current density
Nanoelectrodes have many advantages such as a high current density and a large active area for chemical and biological sensing; the higher sensitivity of nanoelectrodes compared to bulk electrodes for the detection of various biological species has already been demonstrated [1–3]. Because of their unique shape with nanoscale diameters and micrometer-scale lengths that allow for an easy fabrication of device architectures, one-dimensional nanostructures, including carbon nanotubes and nanowires, are promising materials for nanoelectrodes [4–7]. Moreover, their possibility in highly complementary metal-oxide-semiconductor (CMOS) devices and their biocompatibility afford silicon nanowires (Si NWs) further advantages as nanoelectrodes [8–12].
Si NW sensors have been studied thus far with respect to applications as field effect-type transistor. These sensors are fabricated by first growing Si NWs on a substrate, dispersing them into solution such as deionized water or ethanol, depositing the nanowires on a pre-patterned substrate, and finally making metal contacts for electric current signaling. The functionalization of NWs with biological ligand molecules follows subsequently. In this type sensor, the electric field generated by the binding of charged biomolecules at the gate electrode acts as a gate voltage and changes the electric current, which, in turn, enables the sensing of biomolecules [13–15]. However, such sensors show low sensitivity because of the weak current difference induced by the low field effect of charged target biomolecules. These problems could be resolved by the electrochemical type sensor, especially using the vertical nanowire electrode array. In the electrochemical type sensor, the current occurs by the ion molecules in medium. In this situation, high current difference can be expected from the vertical nanowire electrode array when the biomolecules are attached at the nanosized electrode tip because the current path of the charged ion in a medium will be completely blocked. To exploit the potential of this approach, such vertical-type nanoelectrode array needs to be fabricated and biologically functionalized. In particular, the fabrication of such electrode array using a combination of a bottom-up approach that can provide the best suited bio-nanomaterials serving as building blocks of a sensor and a top-down approach that can provide a reliable device-fabrication process could be very useful for the mass production of high-performance biosensors for many applications.
In this paper, we fabricated Au-coated vertical Si nanowire electrode array (VSNEA) by combining a vapor-liquid-solid (VLS) process for the growth of nanowires and CMOS process for the fabrication of electrodes using these nanowires. The feasibility of biomolecule detection of such VSNEA was verified by functionalization with peptides having fluorescent probes and detecting the corresponding signals.
Growth of nanowires and fabrication of electrode array
Si (111) substrate was deposited by 0.1 vol.% 3-aminopropyl triethoxysilane (APTES) solution in absolute ethanol for Au colloid coating. Subsequently, the substrate was immersed in the Au colloid solution having colloids with a diameter of 250 nm. After washing with deionized water and drying, the substrates were placed in a low-pressure chemical vapor deposition (CVD) chamber. Si NWs were synthesized on the Si substrate by a VLS process with the assistance of the Au colloids serving as catalyst at 550°C under a high-vacuum condition with SiH4 gas as a precursor and H2 as a dilution gas. For the fabrication of the electrodes, Si NWs grown on the substrate were coated with an Au electrode and a SiO2 passivation layer. Thereafter, the SiO2 passivation layer was selectively etched out to expose the Au tips at the top of the nanowires by using CMOS process.
Synthesis of peptides
Peptides were synthesized on Rink Amide MBHA resin LL (Novabiochem, Merck KGaA, Darmstadt, Germany) using standard Fmoc protocols on a Tribute™ peptide synthesizer (Protein Technologies, Inc, Tucson, AZ, USA). All amino acids were purchased from Novabiochem. 5(6)-carboxy fluorescein was purchased from Sigma-Aldrich (St. Louis, MO, USA). Fluorescein was attached to the peptide-attached resin (10 μmol of N-terminal amine groups). A mixture of 5(6)-carboxyfluorescein (19 mg, 50 μmol), 2-(1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU) (18 mg, 47.5 μmol), and N,N-diisopropylethylamine (DIPEA) (20 μL, 115 μmol) in N-methyl-2-pyrrolidone (NMP) was incubated for 10 min for carboxyl activation. The resulting solution was mixed with the resin and the reaction was continued for 18 h with shaking at room temperature in a 15-mL conical tube. Then, the resin was washed with tetrahydrofuran (THF) and blown dry with high-purity argon gas. The dried resin was treated with a cleavage cocktail (trifluoroacetic acid (TFA)/1,2-ethanedithiol/thioanisole 95:2.5:2.5) for 3 h and was triturated with tert-butyl methyl ether. The peptides were purified by reverse-phase high-performance liquid chromatography (HPLC) (water-acetonitrile with 0.1% of TFA). The molecular weight was confirmed by MALDI-TOF mass spectrometry. The concentration was determined spectrophotometrically using the molar extinction coefficient of fluorescein (65,000 M-1 cm-1) at 492 nm.
Peptide functionalization of VSNEA
Au-coated VSNEA was immersed in a tissue culture well (BD Falcon™ 24-well Multiwell Plate, BD Biosciences, San Jose, CA, USA) and a mixture of peptides (5 μL of 2.13 μM) and water (700 μL) was added. The reaction was continued for 12 h. Afterward, the substrate was washed multiple times with distilled water and dried in air.
Microscopy and CV measurements
Peptide-decorated Au-coated VSNEA was observed by bright field and fluorescence microscopy (Olympus BX51, U-HGLGPS, Olympus Corporation, Shinjuku, Tokyo, Japan), as well as by scanning and transmission electron microscopies (SEM and TEM, respectively). For the electrochemical characterization of VSNEA, cyclic voltammograms (CV) measurements were carried out using an IVIUM CompactStat system in standard three-electrode configuration. VSNEA, an Au film electrode, and Ag/AgCl were used as working, counter, and reference electrodes, respectively, of the three-electrode configuration. CVs were performed with a 100-mM K3Fe(CN)6 solution as redox material at a scan rate of 20 mV/s.
Results and discussion
In this study, vertically grown Si NWs were used as building blocks for Au-coated VSNEA. It requires vertical growth, as well as control of the areal density of NWs achieved by applying CMOS processing for the electrodes, thereby additionally performing a detection optimization. To control the growth of Si NWs, we utilized a VLS process using Au colloidal nanoparticles as catalyst [16, 17]. To thoroughly disperse the Au nanoparticles, Si substrate was coated with a thin 3-aminopropyl triethoxysilane (APTES) layer. It is well known that Au nanoparticles have a negatively charged surface in aqueous solution and APTES has a positively charged functional amino group . Therefore, the charged surface of the Si substrate deposited with an APTES layer can be used to establish a charge interaction with the Au nanoparticles, thus enabling to achieve a fine and homogeneous dispersion of 250-nm Au nanoparticles on the Si (111) substrate (See Additional file 1: Figure S1 of supplementary data).
To verify the feasibility of Au-coated VSNEA for biomolecules detection, peptides having a fluorescent probe, carboxyfluorescein, were attached the surface on NWs. Peptides are well suited as the bioreceptor component of various biosensors and biomedical applications because they can selectively and tightly bind to a large diversity of biomolecules, including DNA, RNA, and protein targets through modification of their multi-linking polychains [19, 20]. It is also well known that sulfur makes a strong covalent bond with Au in a wide range of temperatures for a variety of solvents . Therefore, a 13-mer peptide was synthesized using solid phase peptide synthesis (SPPS) with standard Fmoc protocols. The peptide was designed to incorporate multiple polar and charged residues (glutamic acids and lysines) in order to increase its water solubility and to prevent nonspecific adsorption of the peptide onto the VSNEA specimen.
Investigations by bright field and fluorescence microscopy were carried out to confirm that peptides were selectively attached to the active Au tip of VSNEA. Figure 3b shows the scheme for the fluorescence analysis of the peptide-decorated Au-coated VSNEA. As shown in Figure 3c, the vertical NWs are observed in the form of small dots in the bright field microscope image. Because this VSNEA specimen has not been treated with peptides, its fluorescence image did not reveal any sign of green fluorescence originating from the fluorescein molecules (Figure 3d). In stark contrast, the VSNEA specimen treated with peptides shows bright green fluorescence light of fluorescein (Figure 3e,f). Colocalization of dots in the upright microscopy images of VSNEA, as evidenced by a comparison between the bright field and the corresponding fluorescence images, strongly suggests a selective binding of the peptides to the Au tips of VSNEA without any nonspecific binding to other areas of the substrate (Figure 3a,b). Calculations considering the volume of the peptide molecule and the surface area of Au show that multiple peptide molecules can be attached to a single Au tip. Such multiple additions of peptides onto Au-coated VSNEA are expected to be useful in exploring biological multivalent interactions.
Calculation of current density of Au film and VSNEA based on CV measurements
Qbare, film = 1.636 × 10-2C
Qbare, NWs = 1.163 × 10-1C
Qpeptide, film = 1.529 × 10-2C
Qpeptide, NWs = 4.899 × 10-2C
Afilm = 4.9 × 10-5 m2
ANWs = 4.925 × 10-8 m2
Calculation of current difference of a Au film and a VSNEA electrode, based on the results of CV measurements
Au-coated VESNA showed large differences in the current with and without the functionalization of peptides. As shown in Table 2, the current of Au-coated VSNEA with peptides decreased by 57.8% compared to the VSNEA without peptides. This large current difference (δ) was almost nine times more than that of the Au film electrodes. The results indicate that the two electrochemical type sensors can detect the target molecules by a current difference that is ascribed to the flow variations of ion molecules in medium. Furthermore, the results represent that the current path through the Au nanoelectrodes in the electrochemical type VSNEA is effectively blocked by the attached peptides and thus it can effectively detects the peptides. The high current density of VSNEA also ascribe to the large difference in current with and without peptides. These outcomes indicate that VSNEA can detect peptides better than film-type electrodes. It should be noted that peptides can be used as ligands to detect various other biomolecules and thus VSNEA could be used as divergent biosensor platforms in many applications.
We vertically grew Si NWs and fabricated Au-coated VSNEA for the peptide detection. The VSNEA was selectively functionalized by multiple peptides to verify their application potential for biomolecules detection. We obtain a steady-state electrochemical current behavior and a high current density from peptides-functionalized Au-coated VSNEA because of the critically small dimension and the vertically aligned nature of this device. Furthermore, VSNEA showed a large current difference with and without peptides that was nine times more than that of Au film electrodes. These results indicate that VSNEA is highly effective to detect peptides, compared to conventional thin-film electrodes. Therefore, VSNEA could be used as divergent biosensor platforms in many applications.
This work was supported by the National Research Foundation of Korea (NRF) grant, funded by the Korea government (MEST) (no. 2012R1A2A1A03010558, 2012R1A1A2006453, 2012–0000888) and the Pioneer Research Program for Converging Technology (2009-008-1529) through the Korea Science and Engineering Foundation funded by the Ministry of Education, Science & Technology and Seoul R&BD program (ST110029).
- Shao Y, Mirkin MV, Fish G, Kokotov S, Palanker D, Lewis A: Nanometer-sized electrochemical sensors. Anal Chem 1997, 69: 1627–1634. 10.1021/ac960887aView Article
- Slevin CJ, Gray NJ, Macpherson JV, Webb MA, Unwin PR: Fabrication and characterisation of nanometre-sized platinum electrodes for voltammetric analysis and imaging. Electrochem Comm 1999, 1: 282–288. 10.1016/S1388-2481(99)00059-4View Article
- Katemann BB, Schuhmann W: Fabrication and characterization of needle-type Pt-disk nanoelectrodes. Electroanalysis 2002, 14: 22–28. 10.1002/1521-4109(200201)14:1<22::AID-ELAN22>3.0.CO;2-FView Article
- Heller I, Kong J, Heering HA, Williams KA, Lemay SG, Dekker C: Individual single-walled carbon nanotubes as nanoelectrodes for electrochemistry. Nano Lett 2005, 5: 137–142. 10.1021/nl048200mView Article
- Tu Y, Lin Y, Ren ZF: Nanoelectrode arrays based on low site density aligned carbon nanotubes. Nano Lett 2003, 3: 107–109. 10.1021/nl025879qView Article
- Li J, Ng HT, Cassell A, Fan W, Chen H, Ye Q, Koehne J, Han J, Meyyappan M: Carbon nanotube nanoelectrode array for ultrasensitive DNA detection. Nano Lett 2003, 3: 597–602. 10.1021/nl0340677View Article
- Yang C, Zhong Z, Lieber CM: Encoding electronic properties by synthesis of axial modulation-doped silicon nanowires. Science 2005, 310: 1304–1307. 10.1126/science.1118798View Article
- Patolsky F, Zheng G, Lieber CM: Nanowire sensors for medicine and the life sciences. Nanomedicine 2006, 1: 51–65. 10.2217/17435818.104.22.168View Article
- Cohen-Karni T, Timko BP, Weiss LE, Lieber CM: Flexible electrical recording from cells using nanowire transistor arrays. Proc Natl Acad Sci U S A 2009, 106: 7309–7313. 10.1073/pnas.0902752106View Article
- Lee K-Y, Shim S, Kim I, Oh H, Kim S, Ahn J-P, Park S-H, Rhim H, Choi H-J: Coupling of semiconductor nanowires with neurons and their interfacial structure. Nanoscale Res Lett 2010, 5: 410–415. 10.1007/s11671-009-9498-0View Article
- Kim W, Ng JK, Kunitake ME, Conklin BR, Yang P: Interfacing silicon nanowires with mammalian cells. J Am Chem Soc 2007, 129: 7228–7229. 10.1021/ja071456kView Article
- Shalek AK, Robinson JT, Karp ES, Lee JS, Ahn D-R, Yoon M-H, Sutton A, Jorgolli M, Gertner RS, Gujral TS, MacBeath G, Yang EG, Park H: Vertical silicon nanowires as a universal platform for delivering biomolecules into living cells. Proc Natl Acad Sci U S A 2010, 107: 1870–1875. 10.1073/pnas.0909350107View Article
- Zheng G, Patolsky F, Cui Y, Wang WU, Lieber CM: Multiplexed electrical detection of cancer markers with nanowire sensor arrays. Nat Biotech 2005, 23: 1294–1301. 10.1038/nbt1138View Article
- Chen Y, Wang X, Erramilli S, Mohanty P, Kalinowski A: Silicon-based nanoelectronic field-effect pH sensor with local gate control. Appl Phys Lett 2006, 89: 223512. 10.1063/1.2392828View Article
- Fan Z, Lu JG: Gate-refreshable nanowire chemical sensors. Appl Phys Lett 2005, 86: 123510. 10.1063/1.1883715View Article
- Hochbaum AI, Fan R, He R, Yang P: Controlled growth of Si nanowire arrays for device integration. Nano Lett 2005, 5: 457–460. 10.1021/nl047990xView Article
- Woodruff JH, Ratchford JB, Goldthorpe IA, McIntyre PC, Chidsey CED: Vertically oriented germanium nanowires grown from gold colloids on silicon substrates and subsequent gold removal. Nano Lett 2007, 7: 1637–1642. 10.1021/nl070595xView Article
- Vandenberg ET, Bertilsson L, Liedberg B, Uvdal K, Erlandsson R, Elwing H, Lundström I: Structure of 3-aminopropyl triethoxy silane on silicon oxide. J Colloid Interface Sci 1991, 147: 103–118. 10.1016/0021-9797(91)90139-YView Article
- Bromley EHC, Channon K, Moutevelis E, Woolfson DN: Peptide and protein building blocks for synthetic biology: from programming biomolecules to self-organized biomolecular systems. ACS Chem Biol 2008, 3: 38–50. 10.1021/cb700249vView Article
- Sanghvi AB, Miller KP-H, Belcher AM, Schmidt CE: Biomaterials functionalization using a novel peptide that selectively binds to a conducting polymer. Nat Mater 2005, 4: 496–502. 10.1038/nmat1397View Article
- Mirkin CA, Letsinger RL, Mucic RC, Storhoff JJ: A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 1996, 382: 607–609. 10.1038/382607a0View Article
- Lin Y, Lu F, Tu Y, Ren Z: Glucose biosensors based on carbon nanotube nanoelectrode ensembles. Nano Lett 2004, 4: 191–195. 10.1021/nl0347233View Article
- Hoeben FJM, Meijer FS, Dekker C, Albracht SPJ, Heering HA, Lemay SG: Toward single-enzyme molecule electrochemistry: [NiFe]-hydrogenase protein film voltammetry at nanoelectrodes. ACS Nano 2008, 2: 2497–2504. 10.1021/nn800518dView Article
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