Table 1 Potential functions and corresponding parameters of coarse-grained method
Interaction | Form | Parameters | Unit |
---|---|---|---|
Bond |
| kb = 6.96 (TT), kb = 6.16 (TM, MM) | kcal/mol Å2 |
r0 = 3.65 (TM), r0 = 3.64 (MM) | Å | ||
Angle |
| kθ = 1.09 (TMT), kθ = 1.19 (TMM, MMM) | kcal/mol |
θ0 = 175.5 (TMT), θ0 = 175 (TMM), θ0 = 173 (TMM) | Degree | ||
Non-bonded |
| ϵ = 0.469 (TT), ϵ = 0.444 (TM), ϵ = 0.42 (MM) | kcal/mol |
σ = 4.585 (TT), σ = 4.5455 (TM), σ = 4.506 (MM) | Å | ||
rc = 15 Å (truncation radius) | |||
Carbon-CG bead |
| A = -583.81 (CT, CM) | kcal/mol |
rc = 10 Å (truncation radius) |